IL_9JMK_006

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JMK_006 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.1603

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9JMK|1|A|G|188
9JMK|1|A|G|189
9JMK|1|A|A|190
9JMK|1|A|A|191
9JMK|1|A|C|192
9JMK|1|A|U|193
9JMK|1|A|G|194
*
9JMK|1|A|C|201
9JMK|1|A|U|202
9JMK|1|A|A|203
9JMK|1|A|A|204
9JMK|1|A|G|205
9JMK|1|A|U|206
9JMK|1|A|A|207
9JMK|1|A|C|208

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain X

50S ribosomal protein L28