IL_9JMK_024

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGGGUAG*CGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JMK_024 not in the Motif Atlas

Geometric match to IL_8B0X_090

Geometric discrepancy: 0.114

The information below is about IL_8B0X_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94128.1

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9JMK|1|A|G|856
9JMK|1|A|G|857
9JMK|1|A|G|858
9JMK|1|A|G|859
9JMK|1|A|U|860
9JMK|1|A|A|861
9JMK|1|A|G|862
*
9JMK|1|A|C|915
9JMK|1|A|G|916
9JMK|1|A|A|917
9JMK|1|A|A|918
9JMK|1|A|U|919
9JMK|1|A|A|920
9JMK|1|A|C|921

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain W

50S ribosomal protein L27

Chain Z

50S ribosomal protein L30