IL_9JMK_037

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JMK_037 not in the Motif Atlas

Homologous match to IL_7A0S_045

Geometric discrepancy: 0.1697

The information below is about IL_7A0S_045

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9JMK|1|A|A|1262
9JMK|1|A|U|1263
9JMK|1|A|A|1264
9JMK|1|A|A|1265
9JMK|1|A|G|1266
9JMK|1|A|U|1267
9JMK|1|A|A|1268
9JMK|1|A|A|1269
*
9JMK|1|A|U|2011
9JMK|1|A|G|2012
9JMK|1|A|A|2013
9JMK|1|A|A|2014
9JMK|1|A|A|2015
9JMK|1|A|U|2016
9JMK|1|A|U|2017

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain E

50S ribosomal protein L4

Chain S

50S ribosomal protein L22