IL_9JMK_051

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9JMK|1|A|A|1801, 9JMK|1|A|C|1816, 9JMK|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JMK_051 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1285

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9JMK|1|A|U|1798
9JMK|1|A|G|1799
9JMK|1|A|C|1800
9JMK|1|A|A|1801
9JMK|1|A|A|1802
9JMK|1|A|A|1803
9JMK|1|A|C|1804
*
9JMK|1|A|G|1813
9JMK|1|A|G|1814
9JMK|1|A|A|1815
9JMK|1|A|C|1816
9JMK|1|A|G|1817
9JMK|1|A|U|1818
9JMK|1|A|A|1819
9JMK|1|A|U|1820
9JMK|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2