IL_9JMK_065

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JMK_065 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.2364

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9JMK|1|A|C|2466
9JMK|1|A|C|2467
9JMK|1|A|A|2468
9JMK|1|A|A|2469
9JMK|1|A|G|2470
*
9JMK|1|A|C|2480
9JMK|1|A|G|2481
9JMK|1|A|A|2482
9JMK|1|A|C|2483
9JMK|1|A|G|2484

Current chains

Chain A

23S ribosomal RNA

Nearby chains