IL_9JMK_082

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

ACC*GAAGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JMK_082 not in the Motif Atlas

Geometric match to IL_2OEU_001

Geometric discrepancy: 0.393

The information below is about IL_2OEU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46387.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

9JMK|1|B|A|29
9JMK|1|B|C|30
9JMK|1|B|C|31
*
9JMK|1|B|G|51
9JMK|1|B|A|52
9JMK|1|B|A|53
9JMK|1|B|G|54
9JMK|1|B|U|55

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L5

Chain O

50S ribosomal protein L18