IL_9JNS_044

3D structure

PDB id

9JNS (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

9JNS|1|A|U|2689, 9JNS|1|A|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JNS_044 not in the Motif Atlas

Homologous match to IL_7A0S_096

Geometric discrepancy: 0.2363

The information below is about IL_7A0S_096

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

9JNS|1|A|U|2687
9JNS|1|A|G|2688
9JNS|1|A|U|2689
9JNS|1|A|U|2690
9JNS|1|A|C|2691
*
9JNS|1|A|G|2718
9JNS|1|A|G|2719
9JNS|1|A|U|2720
9JNS|1|A|A|2721
9JNS|1|A|G|2722

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19