IL_9JPO_032

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

9JPO|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPO_032 not in the Motif Atlas

Homologous match to IL_6CZR_141

Geometric discrepancy: 0.1653

The information below is about IL_6CZR_141

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9JPO|1|A|U|662
9JPO|1|A|A|663
9JPO|1|A|G|664
9JPO|1|A|A|665
9JPO|1|A|G|666
*
9JPO|1|A|U|740
9JPO|1|A|G|741
9JPO|1|A|G|742
9JPO|1|A|A|743

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S6, fully modified isoform

Chain O

30S ribosomal protein S15

Chain R

30S ribosomal protein S18