IL_9JPO_069
3D structure
- PDB id
- 9JPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.18 Å
Loop
- Sequence
- GUAAG*CGUUAUAAC
- Length
- 14 nucleotides
- Bulged bases
- 9JPO|1|a|U|102
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9JPO_069 not in the Motif Atlas
- Homologous match to IL_7A0S_004
- Geometric discrepancy: 0.4484
- The information below is about IL_7A0S_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_94910.1
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
9JPO|1|a|G|81
9JPO|1|a|U|82
9JPO|1|a|A|83
9JPO|1|a|A|84
9JPO|1|a|G|85
*
9JPO|1|a|C|97
9JPO|1|a|G|98
9JPO|1|a|U|99
9JPO|1|a|U|100
9JPO|1|a|A|101
9JPO|1|a|U|102
9JPO|1|a|A|103
9JPO|1|a|A|104
9JPO|1|a|C|105
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain t
- 50S ribosomal protein L24
- Chain x
- 50S ribosomal protein L29
Coloring options: