IL_9JPO_088

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

9JPO|1|a|U|846, 9JPO|1|a|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPO_088 not in the Motif Atlas

Geometric match to IL_8B0X_179

Geometric discrepancy: 0.1204

The information below is about IL_8B0X_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

9JPO|1|a|A|844
9JPO|1|a|A|845
9JPO|1|a|U|846
9JPO|1|a|U|847
9JPO|1|a|C|848
*
9JPO|1|a|G|930
9JPO|1|a|U|931
9JPO|1|a|U|932
9JPO|1|a|A|933
9JPO|1|a|U|934

Current chains

Chain a

23S rRNA

Nearby chains

Chain y

50S ribosomal protein L30