IL_9JPO_108

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9JPO|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPO_108 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.184

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9JPO|1|a|C|1208
9JPO|1|a|U|1209
9JPO|1|a|G|1210
9JPO|1|a|C|1211
9JPO|1|a|G|1212
9JPO|1|a|A|1213
9JPO|1|a|A|1214
9JPO|1|a|G|1215
*
9JPO|1|a|U|1234
9JPO|1|a|G|1235
9JPO|1|a|G|1236
9JPO|1|a|A|1237
9JPO|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L20