IL_9JSR_017

3D structure

PDB id

9JSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

9JSR|1|A|U|846, 9JSR|1|A|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JSR_017 not in the Motif Atlas

Geometric match to IL_8B0X_179

Geometric discrepancy: 0.1947

The information below is about IL_8B0X_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

9JSR|1|A|A|844
9JSR|1|A|A|845
9JSR|1|A|U|846
9JSR|1|A|U|847
9JSR|1|A|C|848
*
9JSR|1|A|G|930
9JSR|1|A|U|931
9JSR|1|A|U|932
9JSR|1|A|A|933
9JSR|1|A|U|934

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L30