IL_9JSR_025

3D structure

PDB id

9JSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

9JSR|1|A|A|1010

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JSR_025 not in the Motif Atlas

Homologous match to IL_7A0S_034

Geometric discrepancy: 0.2002

The information below is about IL_7A0S_034

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9JSR|1|A|U|1004
9JSR|1|A|C|1005
9JSR|1|A|C|1006
9JSR|1|A|C|1007
9JSR|1|A|A|1008
9JSR|1|A|A|1009
9JSR|1|A|A|1010
9JSR|1|A|G|1011
*
9JSR|1|A|C|1150
9JSR|1|A|A|1151

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20