IL_9K0Z_081

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_081 not in the Motif Atlas

Geometric match to IL_9DFE_007

Geometric discrepancy: 0.1213

The information below is about IL_9DFE_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9K0Z|1|h|U|239
9K0Z|1|h|G|240
9K0Z|1|h|A|241
9K0Z|1|h|G|242
9K0Z|1|h|U|243
9K0Z|1|h|A|244
9K0Z|1|h|G|245
*
9K0Z|1|h|C|253
9K0Z|1|h|G|254
9K0Z|1|h|A|255
9K0Z|1|h|A|256
9K0Z|1|h|A|257
9K0Z|1|h|G|258

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain e

Large ribosomal subunit protein bL35

Chain s

Large ribosomal subunit protein uL15