IL_9K0Z_122

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9K0Z|1|h|U|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_122 not in the Motif Atlas

Geometric match to IL_4V9F_048

Geometric discrepancy: 0.1201

The information below is about IL_4V9F_048

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.1

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

23

Unit IDs

9K0Z|1|h|C|1322
9K0Z|1|h|G|1323
9K0Z|1|h|G|1324
9K0Z|1|h|U|1325
9K0Z|1|h|G|1326
9K0Z|1|h|A|1327
9K0Z|1|h|A|1328
9K0Z|1|h|G|1329
*
9K0Z|1|h|U|1349
9K0Z|1|h|G|1350
9K0Z|1|h|G|1351
9K0Z|1|h|A|1352
9K0Z|1|h|G|1353

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain x

Large ribosomal subunit protein bL20