IL_9K10_048

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9K10|1|A|U|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K10_048 not in the Motif Atlas

Geometric match to IL_4V9F_048

Geometric discrepancy: 0.1354

The information below is about IL_4V9F_048

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.1

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

23

Unit IDs

9K10|1|A|C|1322
9K10|1|A|G|1323
9K10|1|A|G|1324
9K10|1|A|U|1325
9K10|1|A|G|1326
9K10|1|A|A|1327
9K10|1|A|A|1328
9K10|1|A|G|1329
*
9K10|1|A|U|1349
9K10|1|A|G|1350
9K10|1|A|G|1351
9K10|1|A|A|1352
9K10|1|A|G|1353

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L20