IL_9K10_075

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

9K10|1|A|G|2018, 9K10|1|A|U|2033, 9K10|1|A|U|2037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K10_075 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.0986

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9K10|1|A|U|2015
9K10|1|A|G|2016
9K10|1|A|C|2017
9K10|1|A|G|2018
9K10|1|A|A|2019
9K10|1|A|A|2020
9K10|1|A|G|2021
*
9K10|1|A|C|2030
9K10|1|A|G|2031
9K10|1|A|A|2032
9K10|1|A|U|2033
9K10|1|A|G|2034
9K10|1|A|U|2035
9K10|1|A|A|2036
9K10|1|A|U|2037
9K10|1|A|A|2038

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2