IL_9K2Z_009

3D structure

PDB id

9K2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HfmIscB-omega RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

ACC*GCUCU

Length

8 nucleotides

Bulged bases

9K2Z|1|B|C|176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K2Z_009 not in the Motif Atlas

Geometric match to IL_8HNT_002

Geometric discrepancy: 0.118

The information below is about IL_8HNT_002

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

9K2Z|1|B|A|175
9K2Z|1|B|C|176
9K2Z|1|B|C|177
*
9K2Z|1|B|G|202
9K2Z|1|B|C|203
9K2Z|1|B|U|204
9K2Z|1|B|C|205
9K2Z|1|B|U|206

Current chains

Chain B

Omega RNA

Nearby chains

Chain A

HfmIscB

Chain C

Target DNA strand