IL_9K30_002

3D structure

PDB id

9K30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the TbaIscB-omega RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UGAC*GGAUGAA

Length

11 nucleotides

Bulged bases

9K30|1|B|U|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K30_002 not in the Motif Atlas

Geometric match to IL_4LCK_006

Geometric discrepancy: 0.1997

The information below is about IL_4LCK_006

Detailed Annotation

Kink-turn from T-box riboswitch

Broad Annotation

Kink-turn

Motif group

IL_51265.4

Basepair signature

cWW-L-tSH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9K30|1|B|U|167
9K30|1|B|G|168
9K30|1|B|A|169
9K30|1|B|C|170
*
9K30|1|B|G|193
9K30|1|B|G|194
9K30|1|B|A|195
9K30|1|B|U|196
9K30|1|B|G|197
9K30|1|B|A|198
9K30|1|B|A|199

Current chains

Chain B

Omega RNA

Nearby chains

Chain A

TbaIscB