IL_9K30_005

3D structure

PDB id

9K30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the TbaIscB-omega RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

ACU*ACCCU

Length

8 nucleotides

Bulged bases

9K30|1|B|C|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K30_005 not in the Motif Atlas

Geometric match to IL_4V9F_051

Geometric discrepancy: 0.1116

The information below is about IL_4V9F_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

9K30|1|B|A|227
9K30|1|B|C|228
9K30|1|B|U|229
*
9K30|1|B|A|254
9K30|1|B|C|255
9K30|1|B|C|256
9K30|1|B|C|257
9K30|1|B|U|258

Current chains

Chain B

Omega RNA

Nearby chains

Chain A

TbaIscB

Chain C

Target DNA strand