IL_9K31_004

3D structure

PDB id

9K31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the YnpsCas9-guide RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UCU*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K31_004 not in the Motif Atlas

Geometric match to IL_5CCB_001

Geometric discrepancy: 0.2875

The information below is about IL_5CCB_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

9K31|1|B|U|142
9K31|1|B|C|143
9K31|1|B|U|144
*
9K31|1|B|G|157
9K31|1|B|A|158
9K31|1|B|G|159

Current chains

Chain B

Guide RNA

Nearby chains