IL_9K9J_004

3D structure

PDB id

9K9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of linear intron of Anabaena tRNA(Leu) precursor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CAAGC*GAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K9J_004 not in the Motif Atlas

Geometric match to IL_1U6B_004

Geometric discrepancy: 0.1695

The information below is about IL_1U6B_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20358.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9K9J|1|A|C|127
9K9J|1|A|A|128
9K9J|1|A|A|129
9K9J|1|A|G|130
9K9J|1|A|C|131
*
9K9J|1|A|G|179
9K9J|1|A|A|180
9K9J|1|A|A|181
9K9J|1|A|G|182

Current chains

Chain A

RNA (251-MER)

Nearby chains