IL_9KKF_088

3D structure

PDB id

9KKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

9KKF|1|S2|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KKF|1|S2|C|1708
9KKF|1|S2|G|1709
9KKF|1|S2|C|1710
9KKF|1|S2|U|1711
*
9KKF|1|S2|A|1822
9KKF|1|S2|A|1823
9KKF|1|S2|A|1824
9KKF|1|S2|A|1825
9KKF|1|S2|G|1826

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain SX

40S ribosomal protein S23

Chain zz

Internal ribosome entry site; IRES