IL_9KMV_025

3D structure

PDB id

9KMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KMV_025 not in the Motif Atlas

Geometric match to IL_9PN5_200

Geometric discrepancy: 0.2145

The information below is about IL_9PN5_200

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39691.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

9KMV|1|2|U|566
9KMV|1|2|C|567
9KMV|1|2|C|568
9KMV|1|2|A|569
*
9KMV|1|2|U|581
9KMV|1|2|U|582
9KMV|1|2|A|583
9KMV|1|2|A|584

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain Y

Small ribosomal subunit protein eS24