IL_9KMV_026

3D structure

PDB id

9KMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMV|1|2|A|599
9KMV|1|2|G|600
9KMV|1|2|G|601
9KMV|1|2|G|602
9KMV|1|2|C|603
9KMV|1|2|A|604
9KMV|1|2|A|605
9KMV|1|2|G|606
*
9KMV|1|2|C|636
9KMV|1|2|U|637

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

Small ribosomal subunit protein uS5

Chain J

Small ribosomal subunit protein uS4

Chain e

Small ribosomal subunit protein eS30

Chain n

ORF1ab polyprotein