IL_9KMW_014

3D structure

PDB id

9KMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KMW_014 not in the Motif Atlas

Geometric match to IL_8GLP_204

Geometric discrepancy: 0.2288

The information below is about IL_8GLP_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.5

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9KMW|1|2|C|188
9KMW|1|2|U|189
9KMW|1|2|G|190
9KMW|1|2|A|191
9KMW|1|2|C|192
*
9KMW|1|2|G|207
9KMW|1|2|G|208
9KMW|1|2|A|209
9KMW|1|2|U|210
9KMW|1|2|G|211

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein eS8