IL_9KMW_017

3D structure

PDB id

9KMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9KMW|1|2|U|361, 9KMW|1|2|C|399, 9KMW|1|2|C|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMW|1|2|U|359
9KMW|1|2|A|360
9KMW|1|2|U|361
9KMW|1|2|C|362
9KMW|1|2|A|363
9KMW|1|2|A|364
*
9KMW|1|2|U|396
9KMW|1|2|G|397
9KMW|1|2|A|398
9KMW|1|2|C|399
9KMW|1|2|C|400
9KMW|1|2|A|401
9KMW|1|2|C|402
9KMW|1|2|G|403

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein eS8

Chain L

Small ribosomal subunit protein uS17

Chain X

Small ribosomal subunit protein uS12