IL_9KN6_031

3D structure

PDB id

9KN6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN6|1|S2|G|563
9KN6|1|S2|A|564
9KN6|1|S2|G|565
*
9KN6|1|S2|C|585
9KN6|1|S2|G|586
9KN6|1|S2|A|587
9KN6|1|S2|G|588
9KN6|1|S2|G|589
9KN6|1|S2|A|590
9KN6|1|S2|U|591
9KN6|1|S2|C|592

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 5B

Eukaryotic translation initiation factor 5B

Chain SJ

40S ribosomal protein S9

Chain Se

40S ribosomal protein S30