IL_9KN6_032

3D structure

PDB id

9KN6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KN6_032 not in the Motif Atlas

Geometric match to IL_8GLP_220

Geometric discrepancy: 0.2967

The information below is about IL_8GLP_220

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9KN6|1|S2|U|566
9KN6|1|S2|C|567
9KN6|1|S2|C|568
9KN6|1|S2|A|569
*
9KN6|1|S2|U|581
9KN6|1|S2|U|582
9KN6|1|S2|A|583
9KN6|1|S2|A|584

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 5B

Eukaryotic translation initiation factor 5B

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24