IL_9KN6_042

3D structure

PDB id

9KN6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KN6_042 not in the Motif Atlas

Geometric match to IL_8DP3_001

Geometric discrepancy: 0.3672

The information below is about IL_8DP3_001

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_15011.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

59

Unit IDs

9KN6|1|S2|G|752
9KN6|1|S2|C|753
9KN6|1|S2|G|754
*
9KN6|1|S2|C|790
9KN6|1|S2|C|791

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SG

40S ribosomal protein S6