IL_9KN6_057

3D structure

PDB id

9KN6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAU*GCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN6|1|S2|C|1098
9KN6|1|S2|G|1099
9KN6|1|S2|A|1100
9KN6|1|S2|U|1101
*
9KN6|1|S2|G|1131
9KN6|1|S2|C|1132
9KN6|1|S2|A|1133
9KN6|1|S2|G|1134

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS2

Chain SB

40S ribosomal protein S3a

Chain SN

40S ribosomal protein S13

Chain SR

40S ribosomal protein S17

Chain Sa

40S ribosomal protein S26