IL_9KZU_198

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|S2|C|676
9KZU|1|S2|G|677
9KZU|1|S2|U|678
9KZU|1|S2|A|679
9KZU|1|S2|G|680
*
9KZU|1|S2|U|1025
9KZU|1|S2|C|1026
9KZU|1|S2|A|1027
9KZU|1|S2|A|1028
9KZU|1|S2|G|1029

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SL

40S ribosomal protein S11

Chain SN

40S ribosomal protein S13

Chain SW

40S ribosomal protein S15a

Chain SX

40S ribosomal protein S23