IL_9MEE_189

3D structure

PDB id

9MEE (explore in PDB, NAKB, or RNA 3D Hub)

Description

GOLLD RNA nanocage (env-38)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAA*UAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MEE_189 not in the Motif Atlas

Geometric match to IL_8CRE_471

Geometric discrepancy: 0.2454

The information below is about IL_8CRE_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.4

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

45

Unit IDs

9MEE|1|K|C|300
9MEE|1|K|A|301
9MEE|1|K|A|302
9MEE|1|K|A|303
*
9MEE|1|K|U|318
9MEE|1|K|A|319
9MEE|1|K|A|320
9MEE|1|K|G|321

Current chains

Chain K

GOLLD RNA nanocage

Nearby chains