IL_9MKK_048

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MKK_048 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1669

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9MKK|1|A|C|1303
9MKK|1|A|G|1304
9MKK|1|A|G|1305
9MKK|1|A|A|1306
9MKK|1|A|U|1307
9MKK|1|A|U|1308
*
9MKK|1|A|A|1329
9MKK|1|A|U|1330
9MKK|1|A|G|1331
9MKK|1|A|A|1332
9MKK|1|A|A|1333
9MKK|1|A|G|1334

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13