IL_9MKK_049

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9MKK|1|A|C|1400, 9MKK|1|A|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MKK_049 not in the Motif Atlas

Geometric match to IL_8CRE_466

Geometric discrepancy: 0.156

The information below is about IL_8CRE_466

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

9MKK|1|A|C|1399
9MKK|1|A|C|1400
9MKK|1|A|G|1401
*
9MKK|1|A|C|1501
9MKK|1|A|A|1502
9MKK|1|A|A|1503
9MKK|1|A|G|1504

Current chains

Chain A

16S rRNA

Nearby chains

Chain X

mRNA

Chain Z

Transfer RNA; tRNA