IL_9MKK_123

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MKK_123 not in the Motif Atlas

Geometric match to IL_5J7L_387

Geometric discrepancy: 0.1573

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9MKK|1|a|U|1851
9MKK|1|a|U|1852
9MKK|1|a|A|1853
9MKK|1|a|A|1854
9MKK|1|a|U|1855
9MKK|1|a|U|1856
9MKK|1|a|G|1857
9MKK|1|a|A|1858
9MKK|1|a|U|1859
9MKK|1|a|G|1860
*
9MKK|1|a|U|1882
9MKK|1|a|U|1883
9MKK|1|a|G|1884
9MKK|1|a|A|1885
9MKK|1|a|U|1886
9MKK|1|a|C|1887
9MKK|1|a|G|1888
9MKK|1|a|A|1889
9MKK|1|a|A|1890
9MKK|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains