IL_9MKK_128

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

9MKK|1|a|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MKK_128 not in the Motif Atlas

Geometric match to IL_4V9F_075

Geometric discrepancy: 0.1704

The information below is about IL_4V9F_075

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

9MKK|1|a|A|2070
9MKK|1|a|A|2071
*
9MKK|1|a|U|2438
9MKK|1|a|A|2439
9MKK|1|a|C|2440
9MKK|1|a|U|2441

Current chains

Chain a

23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain c

50S ribosomal protein L2