IL_9MKK_140

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MKK_140 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.1395

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9MKK|1|a|C|2652
9MKK|1|a|U|2653
9MKK|1|a|A|2654
9MKK|1|a|G|2655
9MKK|1|a|U|2656
9MKK|1|a|A|2657
9MKK|1|a|C|2658
*
9MKK|1|a|G|2663
9MKK|1|a|G|2664
9MKK|1|a|A|2665
9MKK|1|a|C|2666
9MKK|1|a|C|2667
9MKK|1|a|G|2668

Current chains

Chain a

23S rRNA

Nearby chains

Chain g

Large ribosomal subunit protein uL6

Chain j

Large ribosomal subunit protein uL14