IL_9MNC_046

3D structure

PDB id

9MNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to small molecule SW393071

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGAUC*G(JMH)GCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: JMH

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MNC_046 not in the Motif Atlas

Homologous match to IL_8GLP_051

Geometric discrepancy: 0.0287

The information below is about IL_8GLP_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.3

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9MNC|1|L5|G|1425
9MNC|1|L5|G|1426
9MNC|1|L5|A|1427
9MNC|1|L5|U|1428
9MNC|1|L5|C|1429
*
9MNC|1|L5|G|1455
9MNC|1|L5|JMH|1456
9MNC|1|L5|G|1457
9MNC|1|L5|C|1458
9MNC|1|L5|A|1459
9MNC|1|L5|C|1460

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lb

Large ribosomal subunit protein eL29

Chain Lj

Large ribosomal subunit protein eL18