3D structure

PDB id
9MNC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 80S ribosome bound to small molecule SW393071
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
AG(OMG)GCAAG*CU
Length
10 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9MNC|1|S2|A|599
9MNC|1|S2|G|600
9MNC|1|S2|OMG|601
9MNC|1|S2|G|602
9MNC|1|S2|C|603
9MNC|1|S2|A|604
9MNC|1|S2|A|605
9MNC|1|S2|G|606
*
9MNC|1|S2|C|636
9MNC|1|S2|U|637

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SC
Small ribosomal subunit protein uS5
Chain SJ
Small ribosomal subunit protein uS4
Chain Se
FAU ubiquitin-like and ribosomal protein S30

Coloring options:

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