IL_9MOR_141

3D structure

PDB id

9MOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

9MOR|1|2|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MOR_141 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1159

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

9MOR|1|2|U|684
9MOR|1|2|G|685
9MOR|1|2|U|686
9MOR|1|2|A|687
9MOR|1|2|G|688
*
9MOR|1|2|C|699
9MOR|1|2|G|700
9MOR|1|2|U|701
9MOR|1|2|A|702
9MOR|1|2|G|703
9MOR|1|2|A|704
9MOR|1|2|G|705
9MOR|1|2|A|706

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain p

30S ribosomal protein S11