IL_9MOR_161

3D structure

PDB id

9MOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

9MOR|1|2|A|1257, 9MOR|1|2|A|1280, 9MOR|1|2|C|1281

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MOR_161 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.3504

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

9MOR|1|2|G|1255
9MOR|1|2|A|1256
9MOR|1|2|A|1257
9MOR|1|2|G|1258
*
9MOR|1|2|C|1277
9MOR|1|2|G|1278
9MOR|1|2|G|1279
9MOR|1|2|A|1280
9MOR|1|2|C|1281
9MOR|1|2|C|1282

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S3

Chain o

Small ribosomal subunit protein uS10

Chain s

Small ribosomal subunit protein uS14