IL_9MQ4_070

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9MQ4|1|1|A|1801, 9MQ4|1|1|C|1816, 9MQ4|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MQ4_070 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0799

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9MQ4|1|1|U|1798
9MQ4|1|1|G|1799
9MQ4|1|1|C|1800
9MQ4|1|1|A|1801
9MQ4|1|1|A|1802
9MQ4|1|1|A|1803
9MQ4|1|1|C|1804
*
9MQ4|1|1|G|1813
9MQ4|1|1|G|1814
9MQ4|1|1|A|1815
9MQ4|1|1|C|1816
9MQ4|1|1|G|1817
9MQ4|1|1|U|1818
9MQ4|1|1|A|1819
9MQ4|1|1|U|1820
9MQ4|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2