IL_9MQ4_086

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GUGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

9MQ4|1|1|U|2111, 9MQ4|1|1|A|2114, 9MQ4|1|1|G|2115, 9MQ4|1|1|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MQ4_086 not in the Motif Atlas

Homologous match to IL_3U4M_001

Geometric discrepancy: 0.5541

The information below is about IL_3U4M_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

9MQ4|1|1|G|2110
9MQ4|1|1|U|2111
9MQ4|1|1|G|2112
9MQ4|1|1|U|2113
9MQ4|1|1|A|2114
9MQ4|1|1|G|2115
9MQ4|1|1|G|2116
9MQ4|1|1|A|2117
9MQ4|1|1|U|2118
9MQ4|1|1|A|2119
9MQ4|1|1|G|2120
9MQ4|1|1|G|2121
*
9MQ4|1|1|C|2177
9MQ4|1|1|C|2178
9MQ4|1|1|C|2179

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA