IL_9MQ4_147

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

9MQ4|1|2|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MQ4_147 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1143

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

9MQ4|1|2|U|684
9MQ4|1|2|G|685
9MQ4|1|2|U|686
9MQ4|1|2|A|687
9MQ4|1|2|G|688
*
9MQ4|1|2|C|699
9MQ4|1|2|G|700
9MQ4|1|2|U|701
9MQ4|1|2|A|702
9MQ4|1|2|G|703
9MQ4|1|2|A|704
9MQ4|1|2|G|705
9MQ4|1|2|A|706

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain p

30S ribosomal protein S11