3D structure

PDB id
9MTP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
CGAAU*AUAG
Length
9 nucleotides
Bulged bases
9MTP|1|1A|A|283
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9MTP_009 not in the Motif Atlas
Geometric match to IL_9DFE_009
Geometric discrepancy: 0.062
The information below is about IL_9DFE_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_99646.2
Basepair signature
cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

9MTP|1|1A|C|280
9MTP|1|1A|G|281
9MTP|1|1A|A|282
9MTP|1|1A|A|283
9MTP|1|1A|U|284
*
9MTP|1|1A|A|357
9MTP|1|1A|U|358
9MTP|1|1A|A|359
9MTP|1|1A|G|360

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2613 s