IL_9MTR_180

3D structure

PDB id

9MTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGS-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTR_180 not in the Motif Atlas

Geometric match to IL_9DFE_007

Geometric discrepancy: 0.0503

The information below is about IL_9DFE_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9MTR|1|2A|U|239
9MTR|1|2A|G|240
9MTR|1|2A|A|241
9MTR|1|2A|G|242
9MTR|1|2A|U|243
9MTR|1|2A|A|244
9MTR|1|2A|G|245
*
9MTR|1|2A|C|253
9MTR|1|2A|G|254
9MTR|1|2A|A|255
9MTR|1|2A|A|256
9MTR|1|2A|A|257
9MTR|1|2A|G|258

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2P

50S ribosomal protein L15