IL_9MTS_296

3D structure

PDB id

9MTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

9MTS|1|2a|U|244, 9MTS|1|2a|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTS_296 not in the Motif Atlas

Geometric match to IL_4LFB_011

Geometric discrepancy: 0.0666

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

9MTS|1|2a|C|242
9MTS|1|2a|A|243
9MTS|1|2a|U|244
9MTS|1|2a|C|245
9MTS|1|2a|A|246
9MTS|1|2a|G|247
*
9MTS|1|2a|C|277
9MTS|1|2a|G|278
9MTS|1|2a|A|279
9MTS|1|2a|C|280
9MTS|1|2a|G|281
9MTS|1|2a|A|282
9MTS|1|2a|C|283
9MTS|1|2a|G|284

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17