3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
UGUAG*CGUAGAGA
Length
13 nucleotides
Bulged bases
9N2B|1|16|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9N2B_035 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.0894
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

9N2B|1|16|U|684
9N2B|1|16|G|685
9N2B|1|16|U|686
9N2B|1|16|A|687
9N2B|1|16|G|688
*
9N2B|1|16|C|699
9N2B|1|16|G|700
9N2B|1|16|U|701
9N2B|1|16|A|702
9N2B|1|16|G|703
9N2B|1|16|A|704
9N2B|1|16|G|705
9N2B|1|16|A|706

Current chains

Chain 16
16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain 23
Large subunit ribosomal RNA; LSU rRNA
Chain SK
Small ribosomal subunit protein uS11

Coloring options:


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