3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
CGGAUU*AUGAAG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9N2B_056 not in the Motif Atlas
Homologous match to IL_4LFB_055
Geometric discrepancy: 0.0863
The information below is about IL_4LFB_055
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85536.2
Basepair signature
cWW-tSH-L-R-tHS-cWW-cWW
Number of instances in this motif group
8

Unit IDs

9N2B|1|16|C|1303
9N2B|1|16|G|1304
9N2B|1|16|G|1305
9N2B|1|16|A|1306
9N2B|1|16|U|1307
9N2B|1|16|U|1308
*
9N2B|1|16|A|1329
9N2B|1|16|U|1330
9N2B|1|16|G|1331
9N2B|1|16|A|1332
9N2B|1|16|A|1333
9N2B|1|16|G|1334

Current chains

Chain 16
16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SM
30S ribosomal protein S13

Coloring options:


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